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Biorxiv : the Preprint Server for Biology
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May 7, 2024
A latent variable model for evaluating mutual exclusivity and co-occurrence between driver mutations in cancer
Ahmed Shuaibi, Uthsav Chitra, Benjamin J Raphael
Nature Communications
|
February 17, 2025
Resolving discrepancies between chimeric and multiplicative measures of higher-order epistasis
Uthsav Chitra, Brian Arnold, Benjamin J Raphael
Biorxiv : the Preprint Server for Biology
|
December 15, 2025
Mapping spatial gradients in spatial transcriptomics data with score matching
An Wang, Donald Geman, Uthsav Chitra, et al.
Biorxiv : the Preprint Server for Biology
|
July 29, 2024
Quantifying higher-order epistasis: beware the chimera
Uthsav Chitra, Brian J Arnold, Benjamin J Raphael
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|
January 5, 2021
NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks
Matthew A Reyna, Uthsav Chitra, Rebecca Elyanow, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|
December 16, 2022
NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks
Uthsav Chitra, Tae Yoon Park, Benjamin J Raphael
Iscience
|
June 3, 2026
Decoding the causal drivers of spatial cellular topology
Prannav Shankar, Huan Liang, Uthsav Chitra, et al.
Bioinformatics (Oxford, England)
|
July 15, 2025
GASTON-Mix: a unified model of spatial gradients and domains using spatial mixture-of-experts
Uthsav Chitra, Shu Dan, Fenna Krienen, et al.
Bioinformatics (Oxford, England)
|
June 28, 2024
A count-based model for delineating cell-cell interactions in spatial transcriptomics data
Hirak Sarkar, Uthsav Chitra, Julian Gold, et al.
Cell Systems
|
October 20, 2022
Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics
Cong Ma, Uthsav Chitra, Shirley Zhang, et al.
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of 2
Search research articles
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Showing results (1-10 of 14) with videos related to
Sort By:
Page
of 2
Biorxiv : the Preprint Server for Biology
|
May 7, 2024
A latent variable model for evaluating mutual exclusivity and co-occurrence between driver mutations in cancer
Ahmed Shuaibi, Uthsav Chitra, Benjamin J Raphael
Nature Communications
|
February 17, 2025
Resolving discrepancies between chimeric and multiplicative measures of higher-order epistasis
Uthsav Chitra, Brian Arnold, Benjamin J Raphael
Biorxiv : the Preprint Server for Biology
|
December 15, 2025
Mapping spatial gradients in spatial transcriptomics data with score matching
An Wang, Donald Geman, Uthsav Chitra, et al.
Biorxiv : the Preprint Server for Biology
|
July 29, 2024
Quantifying higher-order epistasis: beware the chimera
Uthsav Chitra, Brian J Arnold, Benjamin J Raphael
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|
January 5, 2021
NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks
Matthew A Reyna, Uthsav Chitra, Rebecca Elyanow, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|
December 16, 2022
NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks
Uthsav Chitra, Tae Yoon Park, Benjamin J Raphael
Iscience
|
June 3, 2026
Decoding the causal drivers of spatial cellular topology
Prannav Shankar, Huan Liang, Uthsav Chitra, et al.
Bioinformatics (Oxford, England)
|
July 15, 2025
GASTON-Mix: a unified model of spatial gradients and domains using spatial mixture-of-experts
Uthsav Chitra, Shu Dan, Fenna Krienen, et al.
Bioinformatics (Oxford, England)
|
June 28, 2024
A count-based model for delineating cell-cell interactions in spatial transcriptomics data
Hirak Sarkar, Uthsav Chitra, Julian Gold, et al.
Cell Systems
|
October 20, 2022
Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics
Cong Ma, Uthsav Chitra, Shirley Zhang, et al.
Page
of 2