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Virus Evolution|December 21, 2020
Efficient inference, potential, and limitations of site-specific substitution modelsVadim Puller, Pavel Sagulenko, Richard A NeherVirus Evolution|January 18, 2018
TreeTime: Maximum-likelihood phylodynamic analysisPavel Sagulenko, Vadim Puller, Richard A NeherVirus Evolution|May 2, 2017
In vivo mutation rates and the landscape of fitness costs of HIV-1Fabio Zanini, Vadim Puller, Johanna Brodin, et al.Bioinformatics (Oxford, England)|May 24, 2018
Nextstrain: real-time tracking of pathogen evolutionJames Hadfield, Colin Megill, Sidney M Bell, et al.Experimental Parasitology|June 24, 2016
Optimizing culture conditions for free-living stages of the nematode parasite Strongyloides rattiAlex Dulovic, Vadim Puller, Adrian StreitPhysical Review Letters|August 29, 2014
Single molecule detection of nanomechanical motionVadim Puller, Brahim Lounis, Fabio PistolesiPlos Computational Biology|October 3, 2017
Estimating time of HIV-1 infection from next-generation sequence diversityVadim Puller, Richard Neher, Jan AlbertVirus Evolution|August 18, 2023
Contributions of adaptation and purifying selection to SARS-CoV-2 evolutionRichard A NeherVirus Evolution|June 30, 2025
Lost in the woods: shifting habitats can lead phylogeography astrayRichard A NeherMicrobial Genomics|January 13, 2025
Impact of simulation and reference catalogues on the evaluation of taxonomic profiling pipelinesVadim Puller, Florian Plaza Oñate, Edi Prifti, et al.Pageof 12