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Molecular Cell|October 6, 2018
RNA Velocity: Molecular Kinetics from Single-Cell RNA-SeqValentine Svensson, Lior PachterGenome Biology|February 20, 2020
Protein velocity and acceleration from single-cell multiomics experimentsGennady Gorin, Valentine Svensson, Lior PachterBioinformatics (Oxford, England)|March 17, 2020
Interpretable factor models of single-cell RNA-seq via variational autoencodersValentine Svensson, Adam Gayoso, Nir Yosef, et al.Database : the Journal of Biological Databases and Curation|November 28, 2020
A curated database reveals trends in single-cell transcriptomicsValentine Svensson, Eduardo da Veiga Beltrame, Lior PachterJournal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology|August 29, 2025
A plea for academic truthLior PachterNature Methods|November 20, 2012
Streaming fragment assignment for real-time analysis of sequencing experimentsAdam Roberts, Lior PachterBriefings in Bioinformatics|May 11, 2002
The computational challenges of applying comparative-based computational methods to whole genomesInna Dubchak, Lior PachterPhysical Review. E|September 18, 2020
Special function methods for bursty models of transcriptionGennady Gorin, Lior PachterGenome Medicine|November 25, 2011
RNA-Seq and find: entering the RNA deep fieldAdam Roberts, Lior PachterPageof 21