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Plos Genetics|November 30, 2006
Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sortingDaniel A Pollard, Venky N Iyer, Alan M Moses, et al.BMC Bioinformatics|August 15, 2006
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignmentsDaniel A Pollard, Alan M Moses, Venky N Iyer, et al.Plos Genetics|June 28, 2008
Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservationEmily E Hare, Brant K Peterson, Venky N Iyer, et al.Genome Biology|December 4, 2004
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary modelAlan M Moses, Derek Y Chiang, Daniel A Pollard, et al.Plos Computational Biology|October 17, 2006
Large-scale turnover of functional transcription factor binding sites in DrosophilaAlan M Moses, Daniel A Pollard, David A Nix, et al.Plos One|March 5, 2009
Big genomes facilitate the comparative identification of regulatory elementsBrant K Peterson, Emily E Hare, Venky N Iyer, et al.Plos Biology|February 15, 2008
Transcription factors bind thousands of active and inactive regions in the Drosophila blastodermXiao-yong Li, Stewart MacArthur, Richard Bourgon, et al.Nature|November 13, 2007
Evolution of genes and genomes on the Drosophila phylogeny, Andrew G Clark, Michael B Eisen, et al.Pageof 1