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Imetaomics|February 12, 2026
RTTAP: Empowering metatranscriptomic data analysis with a read-based total-infectome taxonomic solutionWei Jiang, Herui Liao, Mang Shi, et al.Nucleic Acids Research|March 26, 2026
Fast and accurate identification of emerging viral reassortment from genome sequencesDehan Cai, Jiayu Shang, Cheng Peng, et al.Bioinformatics (Oxford, England)|December 12, 2023
GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome dataHerui Liao, Jiayu Shang, Yanni SunMobile DNA|October 19, 2024
Accelerating de novo SINE annotation in plant and animal genomesHerui Liao, Yanni Sun, Shujun OuGenome Biology|February 1, 2022
VirStrain: a strain identification tool for RNA virusesHerui Liao, Dehan Cai, Yanni SunMicrobiome|August 16, 2023
High-resolution strain-level microbiome composition analysis from short readsHerui Liao, Yongxin Ji, Yanni SunBioinformatics Advances|August 29, 2023
PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic dataJiayu Shang, Cheng Peng, Herui Liao, et al.Genome Biology|February 7, 2026
PlasRAG: comprehensive plasmid characterization and retrieval through sequence-text alignmentYongxin Ji, Jiaojiao Guan, Herui Liao, et al.Bioinformatics (Oxford, England)|February 16, 2023
VirBot: an RNA viral contig detector for metagenomic dataGuowei Chen, Xubo Tang, Mang Shi, et al.Journal of Proteome Research|February 25, 2021
Characterizing the Host Coral Proteome of Platygyra carnosa Using Suspension Trapping (S-Trap)Haiying Ma, Herui Liao, Walter Dellisanti, et al.Pageof 674