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Nature Reviews. Genetics|March 29, 2025
Computational analysis of DNA methylation from long-read sequencingYilei Fu, Winston Timp, Fritz J SedlazeckGenome Biology|September 15, 2021
PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylationMedhat Mahmoud, Harshavardhan Doddapaneni, Winston Timp, et al.Gigascience|September 25, 2021
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignmentYilei Fu, Medhat Mahmoud, Viginesh Vaibhav Muraliraman, et al.Nature Communications|June 22, 2024
MethPhaser: methylation-based long-read haplotype phasing of human genomesYilei Fu, Sergey Aganezov, Medhat Mahmoud, et al.Nature Biotechnology|February 12, 2020
Targeted nanopore sequencing with Cas9-guided adapter ligationTimothy Gilpatrick, Isac Lee, James E Graham, et al.Nature Methods|April 30, 2024
Unveiling microbial diversity: harnessing long-read sequencing technologyDaniel P Agustinho, Yilei Fu, Vipin K Menon, et al.Nature Methods|November 24, 2020
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencingIsac Lee, Roham Razaghi, Timothy Gilpatrick, et al.Methods in Cell Biology|January 3, 2009
Chapter 14: Electron microscopy of hydrated samplesWinston Timp, Paul MatsudairaScience Advances|January 18, 2020
Beyond mass spectrometry, the next step in proteomicsWinston Timp, Gregory TimpGenome Research|March 20, 2025
Unraveling the hidden complexity of cancer through long-read sequencingQiuhui Li, Ayse G Keskus, Justin Wagner, et al.Pageof 32