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Nucleic Acids Research|July 10, 2023
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformerXubo Tang, Jiayu Shang, Yongxin Ji, et al.
Briefings in Bioinformatics|November 15, 2023
PhaGenus: genus-level classification of bacteriophages using a Transformer modelJiaojiao Guan, Cheng Peng, Jiayu Shang, et al.
Bioinformatics Advances|August 29, 2023
PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic dataJiayu Shang, Cheng Peng, Herui Liao, et al.
International Immunopharmacology|June 4, 2020
Emodin attenuates acute lung injury in Cecal-ligation and puncture ratsRuimin Guo, Yanjun Li, Min Han, et al.
Imetaomics|February 12, 2026
RTTAP: Empowering metatranscriptomic data analysis with a read-based total-infectome taxonomic solutionWei Jiang, Herui Liao, Mang Shi, et al.
Environmental Science. Processes & Impacts|June 9, 2025
Collaborative sorption behavior of tylosin and enrofloxacin in loess soil: implications for veterinary antibiotic fateZhanrong Jia, Yufeng Jiang, Yanni Sun, et al.
The Plant Journal : for Cell and Molecular Biology|August 12, 2022
Distinct composition and amplification dynamics of transposable elements in sacred lotus (Nelumbo nucifera Gaertn.)Stefan Cerbin, Shujun Ou, Yang Li, et al.
Scientific Reports|August 2, 2025
Liming promotes the leaching of carbon and nitrogen in a double-cropped rice systemJun Tang, Shan Huang, Lei Liu, et al.
Bioinformatics (Oxford, England)|November 23, 2024
ViraLM: empowering virus discovery through the genome foundation modelCheng Peng, Jiayu Shang, Jiaojiao Guan, et al.
Chemical Reviews|June 24, 2022
Artificial Intelligence in Meta-opticsMu Ku Chen, Xiaoyuan Liu, Yanni Sun, et al.
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