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Journal of Chemical Information and Modeling|June 13, 2025
Comparative Analysis of TCR and TCR-pMHC Complex Structure Prediction ToolsYudan Shi, Jerry M Parks, Jeremy C SmithJournal of Immunology (Baltimore, Md. : 1950)|December 1, 2022
HLA Class I Supertype Classification Based on Structural SimilarityYue Shen, Jerry M Parks, Jeremy C SmithJournal of the American Chemical Society|September 22, 2020
Insight into the Catalytic Mechanism of GH11 Xylanase: Computational Analysis of Substrate Distortion Based on a Neutron StructureToyokazu Ishida, Jerry M Parks, Jeremy C SmithBMC Bioinformatics|May 10, 2023
HLA-Clus: HLA class I clustering based on 3D structureYue Shen, Jerry M Parks, Jeremy C SmithJournal of Chemical Information and Modeling|March 21, 2015
HackaMol: An Object-Oriented Modern Perl Library for Molecular Hacking on Multiple ScalesDemian Riccardi, Jerry M Parks, Alexander Johs, et al.The Journal of Physical Chemistry. B|July 9, 2016
Toward Quantitatively Accurate Calculation of the Redox-Associated Acid-Base and Ligand Binding Equilibria of AquacobalaminRyne C Johnston, Jing Zhou, Jeremy C Smith, et al.The Journal of Physical Chemistry. A|April 11, 2018
Quantum Chemical Calculation of p Kas of Environmentally Relevant Functional Groups: Carboxylic Acids, Amines, and Thiols in Aqueous SolutionPeng Lian, Ryne C Johnston, Jerry M Parks, et al.ACS Omega|March 16, 2026
IRIS: A Machine Learning-Based Pose Reranking Tool for RNA-Ligand DockingJason Andrew Amburn, Shalini J Rukmani, Jerry M Parks, et al.Inorganic Chemistry|January 1, 2014
Mercury methylation by HgcA: theory supports carbanion transfer to Hg(II)Jing Zhou, Demian Riccardi, Ariana Beste, et al.The Journal of Physical Chemistry. B|April 12, 2014
Hydrolysis of DFP and the nerve agent (S)-sarin by DFPase proceeds along two different reaction pathways: implications for engineering bioscavengersTroy Wymore, Martin J Field, Paul Langan, et al.Pageof 38