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The British Journal of Nutrition|December 16, 2014
Dietary effects on human gut microbiome diversityZhenjiang Xu, Rob KnightGenome Research|April 23, 2009
Microbial community profiling for human microbiome projects: Tools, techniques, and challengesMicah Hamady, Rob KnightCurrent Opinion in Biotechnology|December 17, 2011
Advancing analytical algorithms and pipelines for billions of microbial sequencesAntonio Gonzalez, Rob KnightMsystems|November 30, 2021
The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum DisorderAmanda H Dilmore, Daniel McDonald, Tanya T Nguyen, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Personalised whole-body modelling links gut microbiota to metabolic perturbations in Alzheimer's diseaseTim Hensen, Lora Khatib, Lucas Patel, et al.Microbiome|February 25, 2016
Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analysesJennifer Fouquier, Jai Ram Rideout, Evan Bolyen, et al.Nature Methods|February 20, 2018
Identifying the favored mutation in a positive selective sweepAli Akbari, Joseph J Vitti, Arya Iranmehr, et al.Nature Communications|May 20, 2020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, et al.Genome Biology|May 23, 2026
ReSkmer: modeling repeats allows k-mer-based alignment-free methods to calculate population genomic distancesEduardo Charvel, Isaac Thomas, Homère J Alves Monteiro, et al.Msystems|April 28, 2021
Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome CompositionClarisse Marotz, Kellen J Cavagnero, Se Jin Song, et al.Pageof 102