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Arxiv|June 10, 2024
Categorization of 33 computational methods to detect spatially variable genes from spatially resolved transcriptomics dataGuanao Yan, Shuo Harper Hua, Jingyi Jessica Li
Journal of Machine Learning Research : JMLR|March 24, 2022
A flexible model-free prediction-based framework for feature rankingJingyi Jessica Li, Yiling Elaine Chen, Xin Tong
Genome Biology|June 29, 2021
mbImpute: an accurate and robust imputation method for microbiome dataRuochen Jiang, Wei Vivian Li, Jingyi Jessica Li
Nature Communications|January 29, 2025
Categorization of 34 computational methods to detect spatially variable genes from spatially resolved transcriptomics dataGuanao Yan, Shuo Harper Hua, Jingyi Jessica Li
Statistics in Biosciences|August 8, 2017
TROM: A Testing-Based Method for Finding Transcriptomic Similarity of Biological SamplesWei Vivian Li, Yiling Chen, Jingyi Jessica Li
Nucleic Acids Research|October 18, 2017
Quantitating translational control: mRNA abundance-dependent and independent contributions and the mRNA sequences that specify themJingyi Jessica Li, Guo-Liang Chew, Mark D Biggin
RNA (New York, N.Y.)|March 11, 2022
The interplay between translational efficiency, poly(A) tails, microRNAs, and neuronal activationTimothy J Eisen, Jingyi Jessica Li, David P Bartel
Bioinformatics (Oxford, England)|August 21, 2020
Bipartite tight spectral clustering (BiTSC) algorithm for identifying conserved gene co-clusters in two speciesYidan Eden Sun, Heather J Zhou, Jingyi Jessica Li
Bioinformatics (Oxford, England)|October 21, 2025
PseudotimeDE-fast: fast testing of differential gene expression along cell pseudotimeYuheng Lai, Dongyuan Song, Lucy Xia, et al.
Research Square|August 14, 2023
ClusterDE: a post-clustering differential expression (DE) method robust to false-positive inflation caused by double dippingDongyuan Song, Kexin Li, Xinzhou Ge, et al.
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