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Genome Biology|August 11, 2019
Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotesJingyi Jessica Li, Guo-Liang Chew, Mark Douglas Biggin
BMC Genomics|January 29, 2016
Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin statesWei Vivian Li, Zahra S Razaee, Jingyi Jessica Li
Genome Biology|January 22, 2022
Statistics or biology: the zero-inflation controversy about scRNA-seq dataRuochen Jiang, Tianyi Sun, Dongyuan Song, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 8, 2025
ClusterDE: A Statistical Software Package for Removing Double-Dipping Bias in Post-Clustering Differential Expression AnalysisChristy Lee, Dongyuan Song, Siqi Chen, et al.
Biorxiv : the Preprint Server for Biology|March 11, 2026
scDesignPop generates realistic population-scale single-cell RNA-seq for power analysis, benchmarking, and privacy protectionChris Y Dong, Yihui Cen, Dongyuan Song, et al.
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