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Nucleic Acids Research|May 4, 2019
MyDGR: a server for identification and characterization of diversity-generating retroelementsFatemeh Sharifi, Yuzhen YeNucleic Acids Research|December 14, 2021
Identification and classification of reverse transcriptases in bacterial genomes and metagenomesFatemeh Sharifi, Yuzhen YeMethods in Molecular Biology (Clifton, N.J.)|April 29, 2017
From Gene Annotation to Function Prediction for MetagenomicsFatemeh Sharifi, Yuzhen YeJournal of Bioinformatics and Computational Biology|June 10, 2009
An ORFome assembly approach to metagenomics sequences analysisYuzhen Ye, Haixu TangBMC Bioinformatics|February 8, 2017
Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elementsQuan Zhang, Yuzhen YeRNA (New York, N.Y.)|May 19, 2016
Characterization of CRISPR RNA transcription by exploiting stranded metatranscriptomic dataYuzhen Ye, Quan ZhangGut Microbes|January 12, 2024
Incorporating metabolic activity, taxonomy and community structure to improve microbiome-based predictive models for host phenotype predictionMahsa Monshizadeh, Yuzhen YeComputational Systems Bioinformatics. Computational Systems Bioinformatics Conference|August 1, 2009
An ORFome assembly approach to metagenomics sequences analysisYuzhen Ye, Haixu TangPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|March 14, 2019
A repository of microbial marker genes related to human health and diseases for host phenotype prediction using microbiome dataWontack Han, Yuzhen YeScientific Reports|April 22, 2025
Identification of microbial species and proteins associated with colorectal cancer by reanalyzing CPTAC proteomic datasetsJamie Canderan, Yuzhen YePageof 36