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Bioinformatics (Oxford, England)|June 18, 2005
Automatic detection of subsystem/pathway variants in genome analysisYuzhen Ye, Andrei Osterman, Ross Overbeek, et al.Current Opinion in Chemical Biology|April 26, 2003
Missing genes in metabolic pathways: a comparative genomics approachAndrei Osterman, Ross OverbeekProtein Science : a Publication of the Protein Society|June 25, 2004
Database searching by flexible protein structure alignmentYuzhen Ye, Adam GodzikNucleic Acids Research|June 25, 2004
FATCAT: a web server for flexible structure comparison and structure similarity searchingYuzhen Ye, Adam GodzikBioinformatics (Oxford, England)|October 10, 2003
Flexible structure alignment by chaining aligned fragment pairs allowing twistsYuzhen Ye, Adam GodzikGenome Research|March 3, 2004
Comparative analysis of protein domain organizationYuzhen Ye, Adam GodzikBioinformatics (Oxford, England)|March 5, 2005
Multiple flexible structure alignment using partial order graphsYuzhen Ye, Adam GodzikPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 11, 2006
Modeling and analyzing three-dimensional structures of human disease proteinsYuzhen Ye, Zhanwen Li, Adam GodzikNucleic Acids Research|December 31, 2005
Flexible Structural Neighborhood--a database of protein structural similarities and alignmentsZhanwen Li, Yuzhen Ye, Adam GodzikBMC Bioinformatics|September 2, 2008
TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings ModelMallika Veeramalai, Yuzhen Ye, Adam GodzikPageof 43