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Methods in Molecular Biology (Clifton, N.J.)|March 24, 2021
MDock: A Suite for Molecular Inverse Docking and Target PredictionZhiwei Ma, Xiaoqin ZouCommunications in Information and Systems|November 25, 2024
Docking strategies for predicting protein-ligand interactions and their application to structure-based drug designZhiwei Ma, Abeeb Ajibade, Xiaoqin ZouJournal of Computational Chemistry|March 25, 2016
SM-TF: A structural database of small molecule-transcription factor complexesXianjin Xu, Zhiwei Ma, Hongmin Sun, et al.Journal of Computer-Aided Molecular Design|January 29, 2019
Predicting protein-ligand binding modes for CELPP and GC3: workflows and insightXianjin Xu, Zhiwei Ma, Rui Duan, et al.The Journal of Physical Chemistry. B|March 2, 2021
Rapid Identification of Inhibitors and Prediction of Ligand Selectivity for Multiple Proteins: Application to Protein KinasesZhiwei Ma, Sheng-You Huang, Fei Cheng, et al.Journal of Chemical Information and Modeling|September 22, 2015
Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR BenchmarksChengfei Yan, Sam Z Grinter, Benjamin Ryan Merideth, et al.Proteins|November 2, 2016
Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactionsXianjin Xu, Liming Qiu, Chengfei Yan, et al.Proteins|June 3, 2020
Performance of human and server prediction in CAPRI rounds 38-45Rui Duan, Liming Qiu, Xianjin Xu, et al.Journal of Computational Chemistry|December 4, 2019
PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational DockingXianjin Xu, Xiaoqin ZouInternational Journal of Molecular Sciences|November 27, 2021
Dissimilar Ligands Bind in a Similar Fashion: A Guide to Ligand Binding-Mode Prediction with Application to CELPP StudiesXianjin Xu, Xiaoqin ZouPageof 33