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Biorxiv : the Preprint Server for Biology|March 3, 2025
Rewiring protein sequence and structure generative models to enhance protein stability predictionZiang Li, Yunan Luo
Biorxiv : the Preprint Server for Biology|February 12, 2026
Deconvolving mutation effects on protein stability and function with disentangled protein language modelsKerr Ding, Ziang Li, Tony Tu, et al.
Biorxiv : the Preprint Server for Biology|June 5, 2026
SynFit: Synergistic Contrastive Learning for Multi-Objective Protein Fitness Prediction and OptimizationTony Tu, Wei Huang, Ziang Li, et al.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 21, 2022
Contrastive learning of protein representations with graph neural networks for structural and functional annotationsJiaqi Luo, Yunan Luo
Biorxiv : the Preprint Server for Biology|March 3, 2025
Learning maximally spanning representations improves protein function annotationJiaqi Luo, Yunan Luo
Nature Machine Intelligence|July 4, 2024
Calibrated geometric deep learning improves kinase-drug binding predictionsYunan Luo, Yang Liu, Jian Peng
Plos Computational Biology|May 29, 2024
Leveraging conformal prediction to annotate enzyme function space with limited false positivesKerr Ding, Jiaqi Luo, Yunan Luo
Biorxiv : the Preprint Server for Biology|March 23, 2026
Evolutionary profile enhancement improves protein function annotation for remote homologsShitong Dai, Jiaqi Luo, Yunan Luo
Iscience|March 31, 2025
Pareto-optimal sampling for multi-objective protein sequence designJiaqi Luo, Kerr Ding, Yunan Luo
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