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Briefings in Bioinformatics|April 20, 2026
NyxBind: enhancing deep neural representations for transcription factor binding site prediction via contrastive learningXu Yang, Qingfa Xiao, Yucheng Xu, et al.Briefings in Bioinformatics|April 8, 2026
SpatialDG: a novel spatial domain identification method for spatially resolved transcriptomics data based on dual-graph neural networkJiahui Wu, Ayomide Oshinjo, Valerio IzziBriefings in Bioinformatics|April 23, 2024
CovEpiAb: a comprehensive database and analysis resource for immune epitopes and antibodies of human coronavirusesXue Zhang, JingCheng Wu, Yuanyuan Luo, et al.Briefings in Bioinformatics|April 22, 2024
A comparative benchmarking and evaluation framework for heterogeneous network-based drug repositioning methodsYinghong Li, Yinqi Yang, Zhuohao Tong, et al.Briefings in Bioinformatics|April 12, 2024
BEERS2: RNA-Seq simulation through high fidelity in silico modelingThomas G Brooks, Nicholas F Lahens, Antonijo Mrčela, et al.Briefings in Bioinformatics|April 17, 2024
Attention-guided variational graph autoencoders reveal heterogeneity in spatial transcriptomicsLixin Lei, Kaitai Han, Zijun Wang, et al.Briefings in Bioinformatics|May 14, 2024
FERREG: ferroptosis-based regulation of disease occurrence, progression and therapeutic responseYuan Zhou, Zhen Chen, Mengjie Yang, et al.Briefings in Bioinformatics|May 13, 2024
Single-cell RNA-seq data analysis reveals functionally relevant biomarkers of early brain development and their regulatory footprints in human embryonic stem cells (hESCs)Md Alamin, Most Humaira Sultana, Isaac Adeyemi Babarinde, et al.Briefings in Bioinformatics|May 3, 2024
DeepSS2GO: protein function prediction from secondary structureFu V Song, Jiaqi Su, Sixing Huang, et al.Briefings in Bioinformatics|May 3, 2024
BERT-TFBS: a novel BERT-based model for predicting transcription factor binding sites by transfer learningKai Wang, Xuan Zeng, Jingwen Zhou, et al.Pageof 555