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Briefings in Bioinformatics|August 31, 2023
HiFun: homology independent protein function prediction by a novel protein-language self-attention modelJun Wu, Haipeng Qing, Jian Ouyang, et al.Briefings in Bioinformatics|August 31, 2023
MpbPPI: a multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein interactionsYang Yue, Shu Li, Lingling Wang, et al.Briefings in Bioinformatics|March 27, 2026
Quantifying transcript complexity via the condition number of gene-specific random matrixBo Zhang, Yaohui Guo, Guoping Liu, et al.Briefings in Bioinformatics|March 27, 2026
Comparison of variant callers using 60 532 multi-ancestry whole genome sequencesHufeng Zhou, Zilin Li, Derek Shyr, et al.Briefings in Bioinformatics|April 19, 2026
Spatial-ZEDNet : a unified spatial transcriptomics framework for detecting differential gene activation and expressionOsafu Augustine Egbon, Komlan Atitey, Jiaqi Li, et al.Briefings in Bioinformatics|April 1, 2026
CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative pickingYu Deng, Shengxiang Wang, Mingrong Xiang, et al.Briefings in Bioinformatics|March 30, 2026
Are we ready for causal discovery in biological systems using deep learning?Hock Chuan Yeo, Kumar SelvarajooBriefings in Bioinformatics|April 22, 2026
Computational nanobody design using graph neural networks and Metropolis Monte Carlo samplingLei Wang, Xiaoming He, Xinzhou Qian, et al.Briefings in Bioinformatics|April 22, 2026
Antibody-antigen neutralization prediction by integrating structural information distillation and physicochemical constraintsYutian Liu, Zhiwei Nie, Jie Chen, et al.Briefings in Bioinformatics|April 30, 2026
Predictive multispecies constraint-based metabolic modeling: case studies and best practicesJoshua A M Kaste, Megan L MatthewsPageof 544