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Briefings in Bioinformatics|August 1, 2025
PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acidsRuochi Zhang, Haoran Wu, Chang Liu, et al.Briefings in Bioinformatics|July 30, 2025
Reconciling multiple connectivity-based systems biology methods for drug repurposingCatalina Gonzalez Gomez, Manuel Rosa-Calatrava, Julien FouretBriefings in Bioinformatics|July 24, 2025
Inferring cell-type-specific gene regulatory network from cellular transcriptomics data with GeneLinkWei Zhang, Bowen Shao, Wenrui Li, et al.Briefings in Bioinformatics|August 3, 2025
A robust and interpretable graph neural network-based protocol for predicting p-glycoprotein substratesKuang-Cheng Hsu, Pei-Hua Wang, Bo-Han Su, et al.Briefings in Bioinformatics|August 1, 2025
A technical review of multi-omics data integration methods: from classical statistical to deep generative approachesAna R Baião, Zhaoxiang Cai, Rebecca C Poulos, et al.Briefings in Bioinformatics|July 24, 2025
Benchmarking of computational demultiplexing methods for single-nucleus RNA sequencing dataYile Fu, Mohamad Youness, Alessia Virzì, et al.Briefings in Bioinformatics|July 24, 2025
SegFinder: an automated tool for identifying complete RNA virus genome segments through co-occurrence in multiple sequenced samplesXue Liu, Jianbin Kong, Yongtao Shan, et al.Briefings in Bioinformatics|March 24, 2025
SC-VAR: a computational tool for interpreting polygenic disease risks using single-cell epigenomic dataGefei Zhao, Binbin LaiBriefings in Bioinformatics|December 3, 2013
Alignment-free phylogenetics and population geneticsBernhard HauboldBriefings in Bioinformatics|December 5, 2013
Comparison of software packages for detecting differential expression in RNA-seq studiesFatemeh Seyednasrollah, Asta Laiho, Laura L EloPageof 556