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Briefings in Bioinformatics|February 20, 2025
CSGDN: contrastive signed graph diffusion network for predicting crop gene-phenotype associationsYiru Pan, Xingyu Ji, Jiaqi You, et al.
Briefings in Bioinformatics|January 20, 2025
BIOTIC: a Bayesian framework to integrate single-cell multi-omics for transcription factor activity inference and improve identity characterization of cellsLan Cao, Wenhao Zhang, Fan Yang, et al.
Briefings in Bioinformatics|January 19, 2025
A benchmarking study of individual somatic variant callers and voting-based ensembles for whole-exome sequencingArnaud Guille, José Adélaïde, Pascal Finetti, et al.
Briefings in Bioinformatics|January 19, 2025
Towards molecular structure discovery from cryo-ET density volumes via modelling auxiliary semantic prototypesAshwin Nair, Xingjian Li, Bhupendra Solanki, et al.
Briefings in Bioinformatics|January 16, 2025
A deep learning feature importance test framework for integrating informative high-dimensional biomarkers to improve disease outcome predictionBaiming Zou, James G Xenakis, Meisheng Xiao, et al.
Briefings in Bioinformatics|January 14, 2025
QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omicsZexuan Wang, Qipeng Zhan, Shu Yang, et al.
Briefings in Bioinformatics|January 11, 2025
Supervised analysis of alternative polyadenylation from single-cell and spatial transcriptomics data with spvAPAQinglong Zhang, Liping Kang, Haoran Yang, et al.
Briefings in Bioinformatics|January 9, 2025
A novel framework for phage-host prediction via logical probability theory and network sparsificationAnkang Wei, Huanghan Zhan, Zhen Xiao, et al.
Briefings in Bioinformatics|January 3, 2025
ProteinF3S: boosting enzyme function prediction by fusing protein sequence, structure, and surfaceMingzhi Yuan, Ao Shen, Yingfan Ma, et al.
Briefings in Bioinformatics|January 3, 2025
DrugAssist: a large language model for molecule optimizationGeyan Ye, Xibao Cai, Houtim Lai, et al.
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