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Nature Methods|May 29, 2025
Decoding post-transcriptional regulatory networks by RNA-linked CRISPR screening in human cellsPatrick J Nugent, Heungwon Park, Cynthia L Wladyka, et al.Nature Methods|May 26, 2025
Single-cell ultra-high-throughput multiplexed chromatin and RNA profiling reveals gene regulatory dynamicsSara Lobato-Moreno, Umut Yildiz, Annique Claringbould, et al.Nature Methods|May 22, 2025
Cell simulation as cell segmentationDaniel C Jones, Anna E Elz, Azadeh Hadadianpour, et al.Nature Methods|May 12, 2025
Physics-driven self-supervised learning for fast high-resolution robust 3D reconstruction of light-field microscopyZhi Lu, Manchang Jin, Shuai Chen, et al.Nature Methods|July 27, 2025
From 2D to 3D and beyond: the evolution and impact of in vitro tumor models in cancer researchGat Rauner, Piyush B Gupta, Charlotte KuperwasserNature Methods|August 4, 2025
Deep-learning-based gene perturbation effect prediction does not yet outperform simple linear baselinesConstantin Ahlmann-Eltze, Wolfgang Huber, Simon AndersNature Methods|June 6, 2025
CellNEST reveals cell-cell relay networks using attention mechanisms on spatial transcriptomicsFatema Tuz Zohora, Deisha Paliwal, Eugenia Flores-Figueroa, et al.Nature Methods|April 29, 2025
Ring deconvolution microscopy: exploiting symmetry for efficient spatially varying aberration correctionAmit Kohli, Anastasios N Angelopoulos, David McAllister, et al.Nature Methods|April 29, 2025
Fast-adaptive super-resolution lattice light-sheet microscopy for rapid, long-term, near-isotropic subcellular imagingChang Qiao, Ziwei Li, Zongfa Wang, et al.Nature Methods|November 7, 2025
Monod: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing dataGennady Gorin, Tara Chari, Maria Carilli, et al.Pageof 342