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Plos Computational Biology|July 27, 2010
The construction and use of log-odds substitution scores for multiple sequence alignmentStephen F Altschul, John C Wootton, Elena Zaslavsky, et al.Plos Computational Biology|July 27, 2010
Intrinsically disordered regions may lower the hydration free energy in proteins: a case study of nudix hydrolase in the bacterium Deinococcus radioduransOmar Awile, Anita Krisko, Ivo F Sbalzarini, et al.Plos Computational Biology|August 6, 2010
More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homologyWing-Cheong Wong, Sebastian Maurer-Stroh, Frank EisenhaberPlos Computational Biology|August 17, 2010
Computational analysis of phosphopeptide binding to the polo-box domain of the mitotic kinase PLK1 using molecular dynamics simulationDavid J Huggins, Grahame J McKenzie, Daniel D Robinson, et al.Plos Computational Biology|August 17, 2010
Computational models of HIV-1 resistance to gene therapy elucidate therapy design principlesSharon Aviran, Priya S Shah, David V Schaffer, et al.Plos Computational Biology|July 1, 2010
Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generationGrigoriy E Pinchuk, Eric A Hill, Oleg V Geydebrekht, et al.Plos Computational Biology|July 10, 2010
The energy landscape, folding pathways and the kinetics of a knotted proteinMichael C Prentiss, David J Wales, Peter G WolynesPlos Computational Biology|July 10, 2010
A comprehensive benchmark of kernel methods to extract protein-protein interactions from literatureDomonkos Tikk, Philippe Thomas, Peter Palaga, et al.Plos Computational Biology|September 24, 2010
Correlated mutations: a hallmark of phenotypic amino acid substitutionsAndreas Kowarsch, Angelika Fuchs, Dmitrij Frishman, et al.Plos Computational Biology|September 24, 2010
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repressionXin He, Md Abul Hassan Samee, Charles Blatti, et al.Pageof 1,188