Geoffrey Fudenberg

24PUBLICATIONS

58CO-AUTHORS

Epigenetics (incl. genome methylation and epigenomics)Genome structure and regulationClassical and physical opticsStatistical and quantitative geneticsEvolutionary computation

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Publications (24)

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|Jun 27, 2026

Antibody-trapping presents a widespread pitfall for microscopy and genomics in the nucleus.

|Jun 12, 2026

CLASH (Chromatin Loop Across-sample Score Harmonizer) quantifies the relative contributions of genetic variation, methylation, and CTCF occupancy on chromatin loop strength across individuals.

|May 18, 2026

Cohesin bridging as a physical principle of enhancer-promoter communication.

|May 13, 2026

The ChIP-FRiP pipeline quantifies co-binding and reveals how antibody background contributes to cohesin ChIP-seq patterns.

|May 07, 2026

Sequence design for three-dimensional genome folding using Akita Semifreddo.

|Mar 23, 2026

Structural variants in human congenital heart disease disrupt distal genomic regulatory contacts of developmental genes.

Jodi Lee, Jingshing Wu, Maureen Pittman

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Frequent Collaborators

Elphège P Nora

Hadi Rahmaninejad

Leonid A Mirny

Katherine S Pollard

Erika C Anderson

Maxime M C Tortora

Karissa L Hansen

David R Kelley

Paulina N Smaruj

Yao Xiao

Frequent Collaborators

Elphège P Nora

Hadi Rahmaninejad

Leonid A Mirny

Katherine S Pollard