David R Kelley

21PUBLICATIONS

52CO-AUTHORS

Animal physiology - cellEvolutionary computationEvolution of developmental systemsArtificial life and complex adaptive systemsChemical and thermal processes in energy and combustion

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Publications (21)

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|May 25, 2026

Teaching an old dog new cells.

|May 07, 2026

Sequence design for three-dimensional genome folding using Akita Semifreddo.

|Nov 24, 2025

Predicting dynamic expression patterns in budding yeast with a fungal DNA language model.

Kuan-Hao Chao, Majed Mohamed Magzoub, Emily Stoops

|Sep 26, 2025

Predicting dynamic expression patterns in budding yeast with a fungal DNA language model.

Kuan-Hao Chao, Majed Mohamed Magzoub, Emily Stoops

|Mar 03, 2025

Selective State Space Models Outperform Transformers at Predicting RNA-Seq Read Coverage.

Ian Holmes, Johannes Linder, David Kelley

|Feb 04, 2025

Interpreting the CTCF-mediated sequence grammar of genome folding with AkitaV2.

Paulina N Smaruj, Fahad Kamulegeya, David R Kelley

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Frequent Collaborators

Geoffrey Fudenberg

Žiga Avsec

Kuan-Hao Chao

Emily Stoops

Sean R Hackett

Anshul Kundaje

Hank Jones

Jacob C Kimmel

Han Yuan

Vikram Agarwal

Frequent Collaborators

Geoffrey Fudenberg

Žiga Avsec

Kuan-Hao Chao

Emily Stoops