Geoffrey Fudenberg

24PUBLICATIONS
58CO-AUTHORS
Epigenetics (incl. genome methylation and epigenomics)Genome structure and regulationClassical and physical opticsStatistical and quantitative geneticsEvolutionary computation
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Publications (24)

|Jun 27, 2026
Antibody-trapping presents a widespread pitfall for microscopy and genomics in the nucleus.

|Jun 12, 2026
CLASH (Chromatin Loop Across-sample Score Harmonizer) quantifies the relative contributions of genetic variation, methylation, and CTCF occupancy on chromatin loop strength across individuals.

|May 18, 2026
Cohesin bridging as a physical principle of enhancer-promoter communication.

|May 13, 2026
The ChIP-FRiP pipeline quantifies co-binding and reveals how antibody background contributes to cohesin ChIP-seq patterns.

|May 07, 2026
Sequence design for three-dimensional genome folding using Akita Semifreddo.

|Mar 23, 2026
Structural variants in human congenital heart disease disrupt distal genomic regulatory contacts of developmental genes.

Jodi Lee, Jingshing Wu, Maureen Pittman

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Frequent Collaborators

7 joint publications

Elphège P Nora

5 joint publications

Hadi Rahmaninejad

5 joint publications

Leonid A Mirny

4 joint publications

Katherine S Pollard