Michal Ziemski

7PUBLICATIONS
28CO-AUTHORS
Automated software engineeringMedical virologyQuery processing and optimisationGenomics and transcriptomicsCurriculum and pedagogy theory and development
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Publications (7)

|Jan 12, 2026
FAIRer DNA sequence data with q2-ena-uploader: a QIIME 2 plugin for data deposition in the European Nucleotide Archive.

Zuzana Sebechlebska, Michal Ziemski, Nicholas A Bokulich

|Feb 20, 2025
MOSHPIT: accessible, reproducible metagenome data science on the QIIME 2 framework.

Michal Ziemski, Liz Gehret, Anthony Simard

|Sep 21, 2022
Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta)data using q2-fondue.

Michal Ziemski, Anja Adamov, Lina Kim

|Nov 08, 2021
RESCRIPt: Reproducible sequence taxonomy reference database management.

Michael S Robeson, Devon R O'Rourke, Benjamin D Kaehler

|Jun 24, 2021
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.

Matthew R Dillon, Evan Bolyen, Anja Adamov

|Apr 18, 2020
Genome-wide interaction screen for Mycobacterium tuberculosis ClpCP protease reveals toxin-antitoxin systems as a major substrate class.

Michal Ziemski, Julia Leodolter, Gabrielle Taylor

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Frequent Collaborators

3 joint publications

Nicholas A Bokulich

3 joint publications

Michael S Robeson Ii

2 joint publications

Eilika Weber-Ban

2 joint publications

Matthew R Dillon