John J Ferrie

7PUBLICATIONS
11CO-AUTHORS
Proteomics and metabolomicsCharacterisation of biological macromoleculesComputational methods in fluid flow, heat and mass transfer (incl. computational fluid dynamics)Proteins and peptidesBiomolecular modelling and design
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Publications (7)

|Aug 14, 2025
Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy Perturbation.

Xinning Li, Ryann Perez, John J Ferrie

|Apr 23, 2021
Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening.

John J Ferrie, Zsofia Lengyel-Zhand, Bieneke Janssen

|Nov 16, 2020
Improved Modeling of Thioamide FRET Quenching by Including Conformational Restriction and Coulomb Coupling.

Jimin Yoon, John J Ferrie, E James Petersson

|Sep 02, 2020
Rosetta Machine Learning Models Accurately Classify Positional Effects of Thioamides on Proteolysis.

Sam Giannakoulias, Sumant R Shringari, Chunxiao Liu

|Feb 28, 2020
Synthesis and characterization of high affinity fluorogenic α-synuclein probes.

Zsofia Lengyel-Zhand, John J Ferrie, Bieneke Janssen

|Apr 06, 2019
Fluorescent Probes for Studying Thioamide Positional Effects on Proteolysis Reveal Insight into Resistance to Cysteine Proteases.

Chunxiao Liu, Taylor M Barrett, Xing Chen

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Frequent Collaborators

7 joint publications

E James Petersson

3 joint publications

Sam Giannakoulias

2 joint publications

Zsofia Lengyel-Zhand

2 joint publications

Bieneke Janssen