Sam Giannakoulias

8PUBLICATIONS
14CO-AUTHORS
Cheminformatics and quantitative structure-activity relationshipsProteomics and metabolomicsSequence analysisElemental semiconductorsPredictive and prognostic markers
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Publications (8)

|Jan 13, 2026
Machine learning prediction of multiple distinct high-affinity chemotypes for α-synuclein fibrils.

Xinning Li, Ryann M Perez, Zhude Tu

|Aug 14, 2025
Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy Perturbation.

Xinning Li, Ryann Perez, John J Ferrie

|Aug 08, 2023
AggBERT: Best in Class Prediction of Hexapeptide Amyloidogenesis with a Semi-Supervised ProtBERT Model.

Ryann Perez, Xinning Li, Sam Giannakoulias

|Jun 03, 2022
Structural impact of thioamide incorporation into a β-hairpin.

Kristen E Fiore, Martijn J Patist, Sam Giannakoulias

|Mar 31, 2022
Rational design of thioamide peptides as selective inhibitors of cysteine protease cathepsin L.

Hoang Anh T Phan, Sam G Giannakoulias, Taylor M Barrett

|Apr 23, 2021
Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening.

John J Ferrie, Zsofia Lengyel-Zhand, Bieneke Janssen

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