Nir Yosef

49PUBLICATIONS
210CO-AUTHORS
Computational ecology and phylogeneticsGenomics and transcriptomicsGene expression (incl. microarray and other genome-wide approaches)Predictive and prognostic markersPhylogeny and comparative analysis
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Publications (49)

|Nov 06, 2026
Pycea: a scverse toolkit for single-cell lineage tracing analysis.

|Sep 30, 2026
CytoVI: deep generative modeling of antibody-based single cell data.

|Sep 24, 2026
ResolVI: addressing noise and bias in spatial transcriptomics.

|Sep 03, 2026
Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis.

|Jul 10, 2026
Can you trust your reconstructed lineage tree? A homoplasy-based approach for irreversible evolution.

|May 14, 2026
Tree reconstruction guarantees from CRISPR-Cas9 lineage tracing data using Neighbor-Joining.

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Frequent Collaborators

9 joint publications

Can Ergen

8 joint publications

Adam Gayoso

7 joint publications

Aaron Streets

6 joint publications

Jonathan Weissman