Yang Shen

26PUBLICATIONS

244CO-AUTHORS

Bioinformatic methods developmentGranular mechanicsProteomics and metabolomicsBiological network analysisApplied immunology (incl. antibody engineering, xenotransplantation and t-cell therapies)

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Publications (26)

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|May 18, 2026

On the state of protein function prediction: a report on the fourth CAFA challenge.

|Mar 27, 2026

ST-PARM: Pareto-Complete Inference-Time Alignment for Multi-Objective Protein Design.

Rujie Yin, Yang Shen

|Nov 14, 2025

Multimodal diffusion for joint design of protein sequence and structure.

Shaowen Zhu, Siddhant Gulati, Yuxuan Liu

|Aug 15, 2024

Current and future directions in network biology.

Marinka Zitnik, Michelle M Li, Aydin Wells

|Mar 18, 2024

Novel antibody language model accelerates IgG screening and design for broad-spectrum antiviral therapy.

Hannah Faisal Almubarak, Wuwei Tan, Andrew D Hoffmann

|Jan 04, 2024

Predicting protein structure from single sequences.

Yang Shen

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Frequent Collaborators

Daisuke Kihara

Predrag Radivojac

Steven E Brenner

Marc F Lensink

Sean D Mooney

Cezary Czaplewski

Paul A Bates

Sheng-You Huang

Panagiotis Katsonis

Castrense Savojardo

Frequent Collaborators

Daisuke Kihara

Predrag Radivojac

Steven E Brenner

Marc F Lensink