Ziyun Ding

72PUBLICATIONS

382CO-AUTHORS

Bioinformatic methods developmentFormal methods for softwareCharacterisation of biological macromoleculesProteins and peptidesPhylogeny and comparative analysis

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Publications (72)

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|Jul 09, 2026

SHREC 2025: Protein surface shape retrieval including electrostatic potential.

|Jun 29, 2026

DAQplugin: Deep Learning based Real-time Model Evaluation Plugin for ChimeraX.

|Jun 12, 2026

Direct Detection and Atomic Modeling of Ligands in Cryo-EM Maps Using Deep Learning.

|May 18, 2026

On the state of protein function prediction: a report on the fourth CAFA challenge.

|Apr 10, 2026

MVGFormer: Multi-view perspective with graph-guided transformer for cryo-ET segmentation.

Haoran Li, Xingjian Li, Huan Wang

|Mar 24, 2026

Peptide-protein docking: from physics-based models to generative intelligence.

Kai Ling, Shu Li, Zicong Zhang

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Frequent Collaborators

22 joint publications

Genki Terashi

12 joint publications

Yuki Kagaya

9 joint publications

Charles W Christoffer

Xiao Wang

Tsukasa Nakamura

Nabil Ibtehaz

Wah Chiu

Uma K Aryal

Woong-Hee Shin

Renzhi Cao

Frequent Collaborators

22 joint publications

Genki Terashi

12 joint publications

Yuki Kagaya

9 joint publications

Charles W Christoffer

9 joint publications

Xiao Wang