Ragnar Groot Koerkamp

6PUBLICATIONS

14CO-AUTHORS

Gene expression (incl. microarray and other genome-wide approaches)Information extraction and fusionSequence analysisComputational statistics

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Publications (6)

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|Jun 03, 2026

Barbell reveals and resolves demultiplexing and trimming issues in Nanopore data.

|Dec 15, 2025

mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing.

Rob Patro, Siddhant Bharti, Prajwal Singhania

|Dec 12, 2024

A near-tight lower bound on the density of forward sampling schemes.

Bryce Kille, Ragnar Groot Koerkamp, Drake McAdams

|Nov 28, 2024

A near-tight lower bound on the density of forward sampling schemes.

Bryce Kille, Ragnar Groot Koerkamp, Drake McAdams

|Jan 24, 2024

Exact global alignment using A* with chaining seed heuristic and match pruning.

Ragnar Groot Koerkamp, Pesho Ivanov

|Apr 18, 2023

Aligning distant sequences to graphs using long seed sketches.

Amir Joudaki, Alexandru Meterez, Harun Mustafa

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Frequent Collaborators

Bryce Kille

Amir Joudaki

Alexandru Meterez

Harun Mustafa

André Kahles

Gunnar Rätsch

Pesho Ivanov

Todd J Treangen

Rob Patro

Rick Beeloo

Frequent Collaborators

Bryce Kille

Amir Joudaki

Alexandru Meterez

Harun Mustafa