Ragnar Groot Koerkamp

6PUBLICATIONS
14CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Information extraction and fusionSequence analysisComputational statistics
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Publications (6)

|Jun 03, 2026
Barbell reveals and resolves demultiplexing and trimming issues in Nanopore data.

|Dec 15, 2025
mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing.

Rob Patro, Siddhant Bharti, Prajwal Singhania

|Dec 12, 2024
A near-tight lower bound on the density of forward sampling schemes.

Bryce Kille, Ragnar Groot Koerkamp, Drake McAdams

|Nov 28, 2024
A near-tight lower bound on the density of forward sampling schemes.

Bryce Kille, Ragnar Groot Koerkamp, Drake McAdams

|Jan 24, 2024
Exact global alignment using A* with chaining seed heuristic and match pruning.

Ragnar Groot Koerkamp, Pesho Ivanov

|Apr 18, 2023
Aligning distant sequences to graphs using long seed sketches.

Amir Joudaki, Alexandru Meterez, Harun Mustafa

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Frequent Collaborators

2 joint publications

Bryce Kille

1 joint publications

Amir Joudaki

1 joint publications

Alexandru Meterez

1 joint publications

Harun Mustafa