Rob Patro

35PUBLICATIONS

56CO-AUTHORS

Query processing and optimisationGenomics and transcriptomicsProcedural content generationInformation extraction and fusionGene expression (incl. microarray and other genome-wide approaches)

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Publications (35)

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|Jun 19, 2026

Kaminari: a frugal colored index for approximate k-mer queries.

|Jun 05, 2026

Highly Constrained Kinetic Models for Single-Cell Gene Expression Analysis.

|Feb 27, 2026

k ache-hash: A dynamic, concurrent, and cache-efficient hash table for streaming k -mer operations.

Jamshed Khan, Rob Patro, Prashant Pandey

|Feb 06, 2026

Optimizing sparse and skew hashing: faster <math><mi>k</mi></math> -mer dictionaries.

Giulio Ermanno Pibiri, Rob Patro

|Dec 15, 2025

mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing.

Rob Patro, Siddhant Bharti, Prajwal Singhania

|Aug 21, 2025

Tree-based differential testing using inferential uncertainty for RNA-seq.

Noor Pratap Singh, Euphy Y Wu, Jason Fan

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Frequent Collaborators

9 joint publications

Dongze He

7 joint publications

Jamshed Khan

6 joint publications

Giulio Ermanno Pibiri

Noor Pratap Singh

Michael I Love

Jason Fan

Yuan Gao