Jamshed Khan
7PUBLICATIONS
9CO-AUTHORS
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Publications (7)
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|Feb 27, 2026
k ache-hash: A dynamic, concurrent, and cache-efficient hash table for streaming k -mer operations.Jamshed Khan, Rob Patro, Prashant Pandey
|Jul 15, 2025
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment.Noor Pratap Singh, Jamshed Khan, Rob Patro
|Feb 20, 2025
Fast and Scalable Parallel External-Memory Construction of Colored Compacted de Bruijn Graphs with Cuttlefish 3.Jamshed Khan, Laxman Dhulipala, Rob Patro
|Dec 16, 2024
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment.Noor Pratap Singh, Jamshed Khan, Rob Patro
|May 22, 2023
Fulgor: A fast and compact k-mer index for large-scale matching and color queries.Jason Fan, Noor Pratap Singh, Jamshed Khan
|Sep 08, 2022
Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2.Jamshed Khan, Marek Kokot, Sebastian Deorowicz
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Frequent Collaborators
7 joint publications
Rob Patro
2 joint publications
Noor Pratap Singh
1 joint publications
Fatemeh Almodaresi
1 joint publications
Marek Kokot
1 joint publications
Sebastian Deorowicz
1 joint publications
Jason Fan
1 joint publications
Giulio Ermanno Pibiri
1 joint publications
Laxman Dhulipala
1 joint publications
Prashant Pandey
