Marek Kokot

10PUBLICATIONS
27CO-AUTHORS
Genomics and transcriptomicsSequence analysisGene expression (incl. microarray and other genome-wide approaches)Empirical software engineeringPlant developmental and reproductive biology
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Publications (10)

|Jul 17, 2026
MKMC enables reference-free transcriptomic analysis using k-mer representations.

|Apr 22, 2026
Reference-free discovery with barcoded single-cell sequencing.

|Apr 17, 2026
FunctionaL Assigning Sequence Homing (FLASH) maps phenotype to sequence with deep and machine learning.

|Apr 13, 2026
A Reference-Free Algorithm Discovers Regulation in the Plant Transcriptome.

Elisabeth Meyer, Evan V Saldivar, Marek Kokot

|Jan 07, 2025
sc-SPLASH provides ultra-efficient reference-free discovery in barcoded single-cell sequencing.

Roozbeh Dehghannasiri, Marek Kokot, Alexander L Starr

|Sep 23, 2024
Scalable and unsupervised discovery from raw sequencing reads using SPLASH2.

Marek Kokot, Roozbeh Dehghannasiri, Tavor Baharav

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Frequent Collaborators

10 joint publications

Sebastian Deorowicz

5 joint publications

Julia Salzman

4 joint publications

Roozbeh Dehghannasiri

2 joint publications

Tavor Baharav