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Davis McCarthy

22PUBLICATIONS

69CO-AUTHORS

Gene expression (incl. microarray and other genome-wide approaches)Cancer geneticsEpigenetics (incl. genome methylation and epigenomics)Artificial life and complex adaptive systemsAnimal systematics and taxonomy

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Publications (22)

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|Nov 26, 2025

Denoising image-based spatial transcriptomics data with DenoIST.

Aaron Wing Cheung Kwok, Annika Vannan, Nicholas E Banovich

|Oct 03, 2025

simPIC:flexible simulation of paired-insertion counts for single-cell ATAC sequencing data.

Sagrika Chugh, Heejung Shim, Davis J McCarthy

|Sep 01, 2025

Bayesian inference for copy number intra-tumoral heterogeneity from single-cell RNA-sequencing data.

PuXue Qiao, Chun Fung Kwok, Guoqi Qian

|Jun 12, 2025

A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity.

Saahithi Mallapragada, Ruqian Lyu, Arianna L Williams-Katek

|Feb 03, 2025

Spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis.

Annika Vannan, Ruqian Lyu, Arianna L Williams

|Dec 23, 2024

Going beyond cell clustering and feature aggregation: Is there single cell level information in single-cell ATAC-seq data?

Aaron Wing Cheung Kwok, Heejung Shim, Davis J McCarthy

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Frequent Collaborators

6 joint publications

Jonathan A Kropski

5 joint publications

Nicholas E Banovich

4 joint publications

Heejung Shim

3 joint publications

Chase J Taylor

3 joint publications

Matthew J Bacchetta

3 joint publications

Lorraine B Ware

3 joint publications

Rajat Walia

3 joint publications

Chun Fung Kwok

3 joint publications

Wayne Crismani

3 joint publications

Ruqian Lyu

Frequent Collaborators

6 joint publications

Jonathan A Kropski

5 joint publications

Nicholas E Banovich

4 joint publications

Heejung Shim

3 joint publications

Chase J Taylor

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