Valentina Boeva

21PUBLICATIONS
118CO-AUTHORS
Genome structure and regulationGene expression (incl. microarray and other genome-wide approaches)Epigenetics (incl. genome methylation and epigenomics)Genomics and transcriptomicsSequence analysis
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Publications (21)

|Aug 24, 2026
Chiron3D: an interpretable deep learning framework for understanding the DNA code of chromatin looping.

|Jul 30, 2026
CDState Resolves Malignant Cell Heterogeneity from Bulk Tumor RNA-Sequencing Data.

|Jul 07, 2026
Striping artifact removal in VisiumHD data through nuclear counts modeling.

|May 21, 2026
UniversalEPI: robust prediction of cell type-specific and differential chromatin interactions from DNA sequence and chromatin accessibility.

|Feb 18, 2026
Robust and efficient annotation of cell states through gene signature scoring.

Laure Ciernik, Agnieszka Kraft, Florian Barkmann

|Jan 12, 2026
Early feature extraction drives model performance in high-resolution chromatin accessibility prediction.

Aayush Grover, Till Muser, Liine Kasak

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Frequent Collaborators

5 joint publications

Katleen De Preter

5 joint publications

Josephine Yates

4 joint publications

Didier Surdez

4 joint publications

Agnieszka Kraft