Josephine Yates

8PUBLICATIONS
37CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Bioinformatic methods developmentPredictive and prognostic markersCancer geneticsGenomics and transcriptomics
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Publications (8)

|Jul 30, 2026
CDState Resolves Malignant Cell Heterogeneity from Bulk Tumor RNA-Sequencing Data.

|Mar 27, 2026
SpatialFusion: A lightweight multimodal foundation model for pathway-informed spatial niche mapping.

Josephine Yates, Mitra Shavakhi, Toni K Choueiri

|Nov 13, 2025
CanSig Benchmarks Methods for Reproducible Cancer Cell State Discovery from Single-Cell Transcriptomic Data.

Florian Barkmann, Josephine Yates, Paweł Czyż

|Aug 28, 2025
MIRO2-mediated mitochondrial transfer from cancer cells induces cancer-associated fibroblast differentiation.

Michael Cangkrama, Huan Liu, Xiaoyu Wu

|Sep 04, 2024
Cell states and neighborhoods in distinct clinical stages of primary and metastatic esophageal adenocarcinoma.

Josephine Yates, Camille Mathey-Andrews, Jihye Park

|Jun 19, 2023
scROSHI: robust supervised hierarchical identification of single cells.

Michael Prummer, Anne Bertolini, Lars Bosshard

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Frequent Collaborators

5 joint publications

Valentina Boeva

3 joint publications

Agnieszka Kraft

2 joint publications

Florian Barkmann

2 joint publications

Eliezer Van Allen