Alaina Shumate

9PUBLICATIONS
99CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Genomics and transcriptomicsEpigenetics (incl. genome methylation and epigenomics)GenomicsAgricultural molecular engineering of nucleic acids and proteins
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Publications (9)

|Dec 27, 2024
Combining DNA and protein alignments to improve genome annotation with LiftOn.

Kuan-Hao Chao, Jakob M Heinz, Celine Hoh

|May 31, 2024
LiftoffTools: a toolkit for comparing gene annotations mapped between genome assemblies.

Alaina Shumate, Steven Salzberg

|Jun 01, 2022
Improved transcriptome assembly using a hybrid of long and short reads with StringTie.

Alaina Shumate, Brandon Wong, Geo Pertea

|Mar 31, 2022
A complete reference genome improves analysis of human genetic variation.

Sergey Aganezov, Stephanie M Yan, Daniela C Soto

|Mar 31, 2022
The complete sequence of a human genome.

Sergey Nurk, Sergey Koren, Arang Rhie

|Mar 31, 2022
Epigenetic patterns in a complete human genome.

Ariel Gershman, Michael E G Sauria, Xavi Guitart

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Frequent Collaborators

5 joint publications

Steven L Salzberg

3 joint publications

Michael C Schatz

3 joint publications

Arang Rhie

3 joint publications

Mihaela Pertea