Gennady Verkhivker

99PUBLICATIONS
28CO-AUTHORS
Biomolecular modelling and designProteomics and metabolomicsBiological adaptationBioinformatic methods developmentArtificial life and complex adaptive systems
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Publications (99)

|Aug 01, 2026
Localized Rigidification and Allosteric Modulation Mechanisms of SARS-CoV-2 Spike Neutralization by Class 3 and Class 4 Antibodies at Atomic Resolution: An Integrated Computational Study of Binding, Dynamics, and Allostery.

|Jul 17, 2026
Integrated Framework for Probing Multimodal Protein Foundation Models with Structure-Functional Interpretability Analysis in Detection of Allosteric Binding Sites.

|May 13, 2026
Mechanisms of Binding and Immune Escape Resistance for Broadly Neutralizing Antibodies Targeting Distinct Conserved SARS-CoV-2 Spike Epitopes: A Hierarchical Approach Integrating Mutational Profiling and Energy Landscape Analysis.

|May 07, 2026
Predicting and Decoding Allosteric Binding Sites Using Protein Language Models and Structure-Based Machine Learning: An Energy Landscape-Guided Explainable AI Framework.

|Apr 10, 2026
Frustration Landscapes of Broadly Neutralizing SARS-CoV-2 Spike Antibodies Targeting Conserved Epitopes Reveal Energetic Logic of Escape-Proof and Escape-Prone Mechanisms.

Mohammed Alshahrani, Will Gatlin, Max Ludwick

|Mar 26, 2026
Decoding the Allosteric Paradox: A Dual Framework Integrating AI Cofolding Models with Landscape-Guided Interpretable AI Framework of Ligand-Protein Binding.

Vedant Parikh, Brandon Foley, Will Gatlin

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Frequent Collaborators

33 joint publications

Mohammed Alshahrani

22 joint publications

Peng Tao

19 joint publications

Sian Xiao

14 joint publications

Vedant Parikh