Nathan LeRoy
10PUBLICATIONS
19CO-AUTHORS
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Publications (10)
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|Nov 24, 2025
Atacformer: A transformer-based foundation model for analysis and interpretation of ATAC-seq data.Nathan J LeRoy, Guangtao Zheng, Oleksandr Khoroshevskyi
|Aug 24, 2024
Methods for constructing and evaluating consensus genomic interval sets.Julia Rymuza, Yuchen Sun, Guangtao Zheng
|Aug 12, 2024
Methods for evaluating unsupervised vector representations of genomic regions.Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi
|Jul 11, 2024
PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata.Nathan J LeRoy, Oleksandr Khoroshevskyi, Aaron O'Brien
|Jul 08, 2024
Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings.Nathan J LeRoy, Jason P Smith, Guangtao Zheng
|Jul 01, 2024
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data.Guangzhi Xiong, Nathan J LeRoy, Stefan Bekiranov
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Frequent Collaborators
10 joint publications
Nathan C Sheffield
6 joint publications
Aidong Zhang
5 joint publications
Guangtao Zheng
4 joint publications
Oleksandr Khoroshevskyi
3 joint publications
Erfaneh Gharavi
3 joint publications
Julia Rymuza
2 joint publications
Aaron O'Brien
2 joint publications
Donald E Brown
2 joint publications
Jason P Smith
1 joint publications
Guangzhi Xiong
