Maria Carilli

8PUBLICATIONS
26CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Statistical mechanics, physical combinatorics and mathematical aspects of condensed matterSensory processes, perception and performanceGenomics and transcriptomicsSequence analysis
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Publications (8)

|Sep 11, 2026
Estimating cis and trans contributions to differences in gene regulation.

|Apr 17, 2026
The Rayleigh Quotient and Contrastive Principal Component Analysis II.

|Apr 10, 2026
Hybrid crosses reveal a cell-type-specific landscape of mouse regulatory variation.

Ryan Weber, Maria Carilli, Elisabeth Rebboah

|Dec 03, 2025
The Rayleigh Quotient and Contrastive Principal Component Analysis I.

Maria Carilli, Kayla Jackson, Lior Pachter

|Nov 07, 2025
Monod: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing data.

Gennady Gorin, Tara Chari, Maria Carilli

|Jul 25, 2024
Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data.

Maria Carilli, Gennady Gorin, Yongin Choi

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Frequent Collaborators

8 joint publications

Lior Pachter

3 joint publications

Tara Chari

3 joint publications

Gennady Gorin

2 joint publications

Ali Mortazavi