Omar Y Ahmed

11PUBLICATIONS
40CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Data models, storage and indexingSensor technology (incl. chemical aspects)Computational complexity and computabilityFormal methods for software
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Publications (11)

|Jul 17, 2026
Current challenges in GWAS integration and fine-mapping for variant interpretation.

|Feb 06, 2026
Integrating multi-omic QTLs and predictive models reveals regulatory architectures at immune related GWAS loci in CD4+ T cells.

Marliette R Matos, Samuel Ghatan, Sean Bankier

|Aug 25, 2025
Robust 16S rRNA classification based on a compressed LCA index.

Omar Ahmed, Christina Boucher, Ben Langmead

|Aug 12, 2025
Quality control of single-cell ATAC-seq data without peak calling using Chromap.

Omar Ahmed, Haowen Zhang, Ben Langmead

|Mar 10, 2025
Run-length compressed metagenomic read classification with SMEM-finding and tagging.

Lore Depuydt, Omar Y Ahmed, Jan Fostier

|Jan 20, 2025
Fast and flexible minimizer digestion with digest.

Alan Zheng, Ishmeal Lee, Vikram S Shivakumar

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Frequent Collaborators

9 joint publications

Ben Langmead

2 joint publications

Travis Gagie

2 joint publications

Nathaniel K Brown

2 joint publications

Tuuli Lappalainen