Travis Gagie

18PUBLICATIONS
31CO-AUTHORS
Genome structure and regulationComputational complexity and computabilityReal and complex functions (incl. several variables)Query processing and optimisationData models, storage and indexing
Featured researcher

Get your video featured.

JoVEPublish with JoVE
Journal

Publications (18)

|Jul 15, 2026
Sarand: exploring antimicrobial resistance gene neighbourhoods in complex metagenomic assembly graphs.

|Apr 06, 2026
Faster run-length compressed suffix arrays.

Nathaniel K Brown, Travis Gagie, Giovanni Manzini

|Dec 15, 2025
A simple grammar-based index for finding approximately longest common substrings.

Travis Gagie, Sana Kashgouli, Gonzalo Navarro

|Dec 15, 2025
Prefix-free parsing for merging big BWTs.

Diego Díaz-Domínguez, Travis Gagie, Veronica Guerrini

|Nov 24, 2025
Movi 2: Fast and Space-Efficient Queries on Pangenomes.

Mohsen Zakeri, Nathaniel K Brown, Travis Gagie

|Aug 12, 2025
b-move: faster lossless approximate pattern matching in a run-length compressed index.

Lore Depuydt, Luca Renders, Simon Van de Vyver

Pageof 3

Frequent Collaborators

6 joint publications

Ben Langmead

4 joint publications

Massimiliano Rossi

4 joint publications

Christina Boucher

4 joint publications

Jan Fostier