John T Lis

20PUBLICATIONS
46CO-AUTHORS
Evolution of developmental systemsPyrometallurgyEpigenetics (incl. genome methylation and epigenomics)Genome structure and regulationDeep learning
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Publications (20)

|Dec 16, 2025
Evolution of promoter-proximal pausing enabled a new layer of transcription control.

Alexandra G Chivu, Brent A Basso, Abderhman Abuhashem

|Nov 24, 2025
Identification of human RNA Polymerase II interactors at early stages of transcription.

Abdullah Ozer, Jin Joo Kang, Yuliang Tang

|Jul 17, 2025
Robust regulatory interplay of enhancers, facilitators, and promoters in a native chromatin context.

Zhou Zhou, Albert Li, Junke Zhang

|Mar 31, 2025
Transcriptional stress induces the overexpression of novel lncRNAs that regulate the BRCA1 locus.

Samantha Cruz-Ruiz, Raphael Vidal, Mayra Furlan-Magaril

|Jun 10, 2024
Dissecting the cis-regulatory syntax of transcription initiation with deep learning.

Kelly Cochran, Melody Yin, Anika Mantripragada

|Dec 18, 2023
Nanoscale photobiotinylation, pulldown and sequencing of region-specific DNA from intact cells.

Thomas C Roberts, Max Kushner, Jack C Crowley

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