Daniel J B Clarke
7PUBLICATIONS
43CO-AUTHORS
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Publications (7)
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|Jun 12, 2025
A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene Sets.Daniel J B Clarke, Giacomo B Marino, Avi Ma'ayan
|Apr 10, 2025
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets.Giacomo B Marino, Stephanie Olaiya, John Erol Evangelista
|Apr 22, 2024
RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO.Giacomo B Marino, Daniel J B Clarke, Eden Z Deng
|Apr 20, 2024
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications.Daniel J B Clarke, Giacomo B Marino, Eden Z Deng
|Jul 17, 2023
Toxicology knowledge graph for structural birth defects.John Erol Evangelista, Daniel J B Clarke, Zhuorui Xie
|Mar 06, 2023
PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices.Alexander Lachmann, Kaeli A Rizzo, Alon Bartal
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Frequent Collaborators
6 joint publications
Avi Ma'ayan
4 joint publications
Giacomo B Marino
1 joint publications
Amanda L Charbonneau
1 joint publications
Arthur Brady
1 joint publications
Karl Czajkowski
1 joint publications
Saranya Canchi
1 joint publications
Robert Carter
1 joint publications
Kyle Chard
1 joint publications
John Erol Evangelista
1 joint publications
Mike D'Arcy
