Tomáš Helikar

18PUBLICATIONS
209CO-AUTHORS
Decision makingProgramming languagesModelling and simulationProcedural content generationPlanning and decision making
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Publications (18)

|Jun 12, 2026
MarkerScout: A Disease-Agnostic Machine Learning Framework for Biomarker Prediction from Multi-Scale Mechanistic Models.

|Jun 12, 2026
TabularQual: A spreadsheet-based format for annotating and curating logical models in SBML-qual.

|May 25, 2026
MechAInistic: A Reviewer-Supervised Multi-Agent LLM System for Auditable Mechanistic Drug-Hypothesis Generation.

|May 04, 2026
AutoRNAseq: Automated Bulk RNA-seq Analysis Pipeline.

|Apr 11, 2025
AI-Driven Applications in Clinical Pharmacology and Translational Science: Insights From the ASCPT 2024 AI Preconference.

Mohamed H Shahin, Prashant Desai, Nadia Terranova

|Apr 13, 2024
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5.

Lucian P Smith, Frank T Bergmann, Alan Garny

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Frequent Collaborators

8 joint publications

Bhanwar Lal Puniya

5 joint publications

Anna Niarakis

4 joint publications

Henning Hermjakob

3 joint publications

Akira Funahashi