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Published on: June 13, 2014
The potential significance of adaptive evolution and dimerization in chimpanzee intercellular cell adhesion molecules
Nicole A R Walter1, Justin Stebbing, Walter Messier
1Evolutionary Genomics, Colorado Bioscience Park Center, 12635 East Montview Boulevard, Aurora, Colorado 80010, USA. waltern@ohsu.edu
Insights
Chimpanzee intercellular cell adhesion molecules (ICAMs) show adaptive evolution, potentially explaining their resistance to immunodeficiency virus progression. This suggests ICAMs evolved to control viral binding and infection.
Area of Science:
- Evolutionary biology
- Immunology
- Virology
Background:
- Cell adhesion molecules (ICAMs) play roles in cellular processes.
- Human immunodeficiency virus (HIV-1) hijacks ICAM functions to boost infection.
- Chimpanzees infected with immunodeficiency viruses often do not progress to disease.
Purpose of the Study:
- Investigate adaptive changes in chimpanzee ICAMs and their ligands.
- Understand the mechanisms behind non-progression in SIVcpz-infected chimpanzees.
Main Methods:
- Amplified protein coding regions of non-human primate ICAMs 1-5 and ligands LFA-1/Mac-1.
- Utilized phylogenetic tree-based comparative genomics to detect adaptive evolution.
- Screened for Darwinian positive selection in ICAM genes.
Main Results:
- Observed strong positive selection in chimpanzee ICAMs 1, 2, and 3.
- Identified selection hotspots in ICAM-1 dimerization domains.
- Hypothesized evolved ICAM dimerization modulates ligand binding, including virion attachment.
Conclusions:
- Chimpanzee ICAMs exhibit adaptive evolution potentially linked to viral resistance.
- Evolved ICAM dimerization may explain lack of immunosuppression in HIV-1/SIVcpz-infected chimpanzees.
- Ancient retroviral pandemics may have driven chimpanzee ICAM adaptation.
Abstract:
Cell adhesion molecules are involved in a diverse array of cellular processes. Recent data suggests that human immunodeficiency virus (HIV-1) co-opts their functions, in particular the properties of the intercellular cell adhesion molecules (ICAMs), to enhance viral infection and transmission. To investigate mechanisms that may underlie the non-progression that occurs in immunodeficiency virus-infected chimpanzees, we amplified the protein coding regions of multiple non-human primate ICAMs 1-5 and two ICAM ligands, leukocyte function-associated antigen-1 (LFA-1) and macrophage antigen 1 (Mac-1). We then employed a phylogenetic tree-based approach to comparative genomics, in order to screen for the presence of adaptive changes. Strong Darwinian positive selection in chimpanzee ICAMs 1, 2 and 3 was observed, most markedly in domains that are critical for the integrity and maintenance of ICAM-1 dimerization. As binding of ligands, including the attachment of virions, is influenced by the state of ICAM 1 dimerization, chimpanzee ICAMs may have evolved to modulate their own dimerization. In concert with previous evidence suggesting an ancient retroviral pandemic as a prominent selective force in chimpanzee evolution, adaptation of chimpanzee ICAMs may have effected a mechanism that explains the lack of immunosuppression observed following HIV-1 or simian immunodeficiency virus (SIVcpz) infection.
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