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Updated: Jun 17, 2026

Rigid Embedding of Fixed and Stained, Whole, Millimeter-Scale Specimens for Section-free 3D Histology by Micro-Computed Tomography
Published on: October 17, 2018
Fixation and embedding
Constance Oliver1, Maria Célia Jamur
1Department of Cell and Molecular Biology, Faculdade de Medicina de Ribeirão Preto, University of São Paulo, Ribeirão Preto, SP, Brazil.
Insights
Optimizing electron microscopic immunocytochemistry requires balancing tissue structure and antigen detection. Fixation and embedding methods are crucial for successful immunogold labeling, impacting results in pre- and post-embedding staining.
Area of Science:
- Electron Microscopy
- Immunocytochemistry
- Cell Biology
Background:
- Fixation in electron microscopy presents a challenge, balancing morphological preservation with antigenicity.
- The choice of fixative and embedding resin is critical for immunogold labeling success.
- Labeling can occur pre- or post-embedding, each with specific fixation requirements.
Purpose of the Study:
- To outline optimal fixation and embedding strategies for electron microscopic immunocytochemistry.
- To address the compromise between morphology and antigenicity in electron microscopy.
- To guide the selection of methods for pre- and post-embedding immunogold labeling.
Main Methods:
- Discusses conventional and microwave fixation techniques.
- Explores various embedding resins and their impact on immunostaining.
- Details strategies for pre-embedding immunolabeling with optional refixation.
- Covers post-embedding immunolabeling, emphasizing initial fixative composition.
Main Results:
- Pre-embedding staining allows for mild fixation or unfixed labeling followed by stronger refixation.
- Post-embedding staining necessitates a single fixative that preserves both morphology and antigenicity.
- Embedding resins can influence the outcome of post-embedding immunogold staining.
Conclusions:
- Effective electron microscopic immunocytochemistry relies on carefully chosen fixation and embedding protocols.
- Method selection depends on whether labeling precedes or follows sample embedding.
- Preserving antigenicity alongside morphological detail is key for reliable immunolabeling results.
Abstract:
For electron microscopic immunocytochemistry, the fixation procedure is always a compromise between good morphological preservation and retention of antigenicity. The choice of fixative depends on whether the immunogold labeling will be done before or after the samples are embedded and on how resistant the antigen is to fixation. For preembedding staining, it is possible to immunolabel the samples prior to fixation or after only a very mild fixation. Following immunolabeling, the samples can be refixed in a stronger fixative, such as 2% glutaraldehyde, to give good morphological preservation. Since it is not possible to refix the tissue after immunolabeling, for postembedding labeling, the composition of the initial fixative must be such that morphological detail and antigenicity are both preserved. While virtually any embedding resin may be used for immunogold staining, for postembedding methods, the resin can affect the immunostaining. In this chapter, methods are given for conventional fixation and microwave fixation as well as for embedding in various resins.
Related Concept Videos
Fixation and Sectioning
The simplest type of preparation is the wet mount, in which the specimen is placed in a drop of liquid on the slide. A liquid specimen can be directly deposited on the slide using a dropper. Solid specimens, such as skin scraping, can be placed on the slide before adding a drop of liquid to prepare the wet mount. Sometimes the liquid is simply water, but stains are often added...
Preparation of Samples for Electron Microscopy
Framing Effects
Simple Staining Technique
Immunogold Electron Microscopy

