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Updated: Apr 7, 2026

Nano-fEM: Protein Localization Using Photo-activated Localization Microscopy and Electron Microscopy
Published on: December 3, 2012
Correlative Microscopy for Localization of Proteins In Situ: Pre-embedding Immuno-Electron Microscopy Using
1National Center for Microscopy and Imaging Research, University of California San Diego, La Jolla, CA, 92093, USA, dboassa@ucsd.edu.
Insights
This study details a pre-embedding immuno-electron microscopy (immuno-EM) method for pinpointing protein locations within cells. This technique preserves fluorescence and allows for precise electron microscopy localization, despite being labor-intensive.
Area of Science:
- Cell Biology
- Microscopy Techniques
- Protein Localization
Background:
- Immuno-electron microscopy (immuno-EM) is crucial for determining the subcellular localization of proteins.
- Existing immuno-EM methods include pre-embedding, post-embedding, and cryosectioning (Tokuyasu style).
Purpose of the Study:
- To describe a pre-embedding immuno-EM technique for in situ protein labeling.
- To demonstrate the retention of fluorescence signal in plastic for electron microscopy (EM) localization.
- To enable protein localization within a specific cellular context at the EM level.
Main Methods:
- A pre-embedding immuno-EM approach was developed and optimized.
- Optimization involved fixation protocols to preserve cellular morphology.
- Screening of compatible antibodies was essential for successful labeling.
Main Results:
- The described method allows for in situ labeling of target proteins.
- Fluorescence signal is retained within the plastic embedding medium.
- Successful localization of proteins at the EM level within the cellular context was achieved.
Conclusions:
- The developed pre-embedding immuno-EM technique is a powerful tool for protein localization.
- While technically challenging and labor-intensive, the method provides high-resolution subcellular localization data.
- Careful optimization of fixation and antibody screening is critical for success.
Abstract:
Immuno-electron microscopy (immuno-EM) is a technique that has been used widely to determine subcellular localization of proteins. Different approaches are available for immuno-EM: pre-embedding method, post-embedding, and cryosectioning (Tokuyasu "style"). Here we describe a pre-embedding technique that allows the labeling of a target protein in situ, retention of fluorescence signal in plastic, and its localization at the EM level in a given cellular context. The procedure can be technically challenging and labor intensive: it requires optimization of fixation protocols to better preserve the cellular morphology and screening of compatible antibodies. Nevertheless, immuno-EM can be a powerful localization tool.
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