Related Experiment Video
Updated: Jan 30, 2026

Synthetic Antigen Controls for Immunohistochemistry
Published on: August 23, 2021
Selecting an Optimal Positive IHC Control for Verifying Antigen Retrieval
Seshi R Sompuram1, Kodela Vani1, Anika K Schaedle1
1Medical Discovery Partners LLC, Boston, Massachusetts.
Insights
Selecting appropriate positive controls is crucial for verifying heat-induced epitope retrieval (HIER) in immunohistochemistry (IHC). Low or intermediate analyte concentration controls are best for confirming HIER efficacy, unlike high concentrations which can be insensitive.
Area of Science:
- * Immunohistochemistry
- * Molecular Biology
- * Pathology
Background:
- * Positive controls in immunohistochemistry (IHC) aim to detect issues in immunostaining and heat-induced epitope retrieval (HIER).
- * The specific features of a control essential for verifying HIER remain unclear.
- * Formalin-fixed tissues may not always be suitable for verifying HIER, as some stain without it.
Purpose of the Study:
- * To investigate the critical features of positive controls for verifying HIER in IHC.
- * To understand the impact of formalin fixation on epitope masking and HIER verification.
- * To determine the optimal analyte concentration in positive controls for effective HIER assessment.
Main Methods:
- * Utilized formalin-fixed peptide epitopes as a model system for precise control definition.
- * Analyzed variable epitope masking caused by formalin fixation based on primary antibody recognition.
- * Investigated the role of amino acid reactivity with formaldehyde in epitope masking variability.
Main Results:
- * Formalin fixation causes variable epitope masking, dependent on the specific epitope and primary antibody.
- * Amino acid composition influences an epitope's susceptibility to formaldehyde-induced masking.
- * Positive controls with low or intermediate analyte concentrations are more sensitive for verifying HIER than high concentrations.
Conclusions:
- * Not all formalin-fixed tissues are adequate controls for HIER verification.
- * Epitope masking by formalin fixation varies significantly.
- * Selecting positive controls with appropriate analyte concentration is critical for validating HIER in IHC.
Abstract:
Positive immunohistochemistry (IHC) controls are intended to detect problems in both immunostaining and heat-induced epitope retrieval (HIER). However, it is not known what features in a control are important for verifying HIER. Contrary to expectation, the fact that a tissue is formalin-fixed does not necessarily render it suitable in verifying proper HIER. Some tissue controls, for some immunostains, strongly stain even without HIER. Consequently, the control may verify the immunostain but provide little or no information regarding the HIER step. To sort this out, we used formalin-fixed peptide epitopes, a model that provides for precise definition of analyte concentration, epitope composition, and degree of fixation. Our data demonstrate that formalin fixation generates a variable level of protein epitope masking, depending on the epitope recognized by the primary antibody. Some epitopes are highly masked while others hardly at all. Furthermore, the ability of amino acids in the epitope to react with formaldehyde can, at least in part, account for this variability. Most important, we demonstrate the importance of selecting a positive control with a low or intermediate analyte concentration (relative to the immunostain's analytic sensitivity). High analyte concentrations can be insensitive in verifying the HIER step.
Related Concept Videos
Retrieval
Recall involves accessing information without cues, such as during an essay test, where individuals must retrieve facts and concepts from memory unaided. Another example is remembering the name of a colleague...
ER Retrieval Pathway
The ER uses many checkpoints to prevent the entry of incorrectly folded or a resident protein as cargo onto a transport vesicle. These mechanisms...
Position-effect Variegation
What is Natural Selection?
Optimal Foraging
Serial Position Effect

